Yersinia pestis branch 2.MED
Medievalis. Central Asian foci; historically associated with the second pandemic though the medieval genomes themselves fall basal to this branch.
Branch 2.MED carries biovar Medievalis, defined by glycerol fermentation together with the inability to reduce nitrate. Its present-day distribution is central Asian, in the rodent foci around the Caspian.
The name records a nineteenth-century hypothesis rather than a genomic result, and it is the source of a persistent confusion worth stating plainly: the genomes recovered from second pandemic burials do not fall within this branch. Ancient genomes from Black Death victims sit basal to the divergence that gave rise to 2.MED, so the biovar name should be read as a historical label attached by phenotype, not as evidence that this branch caused the medieval pandemic.
Plasmid content
Copy number is a per-genome measurement, never a species constant.
| Replicon | present | partial | absent | not measured |
|---|---|---|---|---|
chromosome |
3 | 0 | 0 | 0 |
pMT1 |
2 | 1 | 0 | 0 |
pCD1 |
2 | 0 | 0 | 1 |
pPCP1 |
1 | 0 | 1 | 1 |
Defining markers
cgMLST is the reference typing method for the genus (BIGSdb-Pasteur). SNP branch nomenclature applies to Y. pestis alone, which is a monomorphic clone.
| Type | Code | Source |
|---|---|---|
| other | Biovar Medievalis: glycerol +, nitrate - | Devignat 1951; branch assignment from Cui et al. 2013 |
Typing equivalences
Three cgMLST schemes coexist for the genus and have never been compared in the literature. They are shown side by side; this atlas does not arbitrate between them.
| System | Code | Match |
|---|---|---|
| biovar | Medievalis | exact |
| cui2013 | 2.MED | exact |
| pandemic | Historically associated with the second pandemic | approximate |
Genomes (3)
| Accession | Strain | Country | Collection year | Assembly level |
|---|---|---|---|---|
GCA_000006645.1 |
KIM | — | — | Complete Genome |
GCA_000169655.1 |
K1973002 | — | — | Contig |
GCA_000182705.1 |
KIM D27 | — | — | Scaffold |
API : /api/v1/taxa/2.MED