Yersinia pestis branch 2.ANT
Antiqua branch of lineage 2, central and east Asian foci.
Plasmid content
Copy number is a per-genome measurement, never a species constant.
| Replicon | present | partial | absent | not measured |
|---|---|---|---|---|
chromosome |
3 | 0 | 0 | 0 |
pMT1 |
3 | 0 | 0 | 0 |
pCD1 |
2 | 0 | 1 | 0 |
pPCP1 |
2 | 1 | 0 | 0 |
Defining markers
cgMLST is the reference typing method for the genus (BIGSdb-Pasteur). SNP branch nomenclature applies to Y. pestis alone, which is a monomorphic clone.
| Type | Code | Source |
|---|---|---|
| other | Biovar Antiqua: glycerol +, nitrate + | Devignat 1951; branch assignment from Cui et al. 2013 |
Typing equivalences
Three cgMLST schemes coexist for the genus and have never been compared in the literature. They are shown side by side; this atlas does not arbitrate between them.
| System | Code | Match |
|---|---|---|
| biovar | Antiqua | exact |
| cui2013 | 2.ANT | exact |
Genomes (3)
| Accession | Strain | Country | Collection year | Assembly level |
|---|---|---|---|---|
GCA_000182485.1 |
Nepal516 | — | — | Scaffold |
GCA_000323305.1 |
34008 | — | — | Contig |
GCA_000834275.1 |
Harbin35 | China | 1940 | Complete Genome |
API : /api/v1/taxa/2.ANT